A KMER-based genome-wIde Assocation testing approach on polyploids
Repository for Colantonio et al., 2022, "Metabolomic Selection for Enhanced Fruit Flavor"
This is a method to find telomeres and centromeres in plants.
Genomic plot in trellis layout
Nucmer from Mummer3 followed by ggplot for nicer and more customisable genome alignment plots.
new layout algorithms for network visualizations in R
Concatenates FASTA formatted files to one "phyml" (PHYLIP) formatted file
Fast calculation of the ABBA-BABA statistics across many populations/species
Generating iToL annotations from Spreadsheet or CSV files
Comprehensive, detailed and interactive plots for STRUCTURE and ADMIXTURE population analysis
Scripts for analysis used during the course
Genome wide, SV, CNV, SNV rainfall plots
LocusZoom Pipeline Project
Efficient program for calculating Extended Haplotype Homozygosity (EHH) and Integrated Haplotype Score (iHS)
Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data
Plot structural variant signals from many BAMs and CRAMs
Comprehensive benchmark of structural variant callers
