# snakemake

**Repository Path**: trusted-list/snakemake

## Basic Information

- **Project Name**: snakemake
- **Description**: This is the development home of the workflow management system Snakemake. For general information, see
- **Primary Language**: Unknown
- **License**: MIT
- **Default Branch**: main
- **Homepage**: https://snakemake.github.io
- **GVP Project**: No

## Statistics

- **Stars**: 0
- **Forks**: 0
- **Created**: 2026-03-14
- **Last Updated**: 2026-08-28

## Categories & Tags

**Categories**: Uncategorized

**Tags**: None

## README

[![Gitpod Ready-to-Code](https://img.shields.io/badge/Gitpod-ready--to--code-blue?logo=gitpod)](https://gitpod.io/#https://github.com/snakemake/snakemake)
[![GitHub Workflow Status (with event)](https://img.shields.io/github/actions/workflow/status/snakemake/snakemake/main.yml?label=tests)](https://github.com/snakemake/snakemake/actions?query=branch%3Amain++)
[![Sonarcloud Status](https://sonarcloud.io/api/project_badges/measure?project=snakemake_snakemake&metric=alert_status)](https://sonarcloud.io/dashboard?id=snakemake_snakemake)
[![Conda Version](https://img.shields.io/conda/vn/bioconda/snakemake)](https://anaconda.org/bioconda/snakemake)
[![Bioconda](https://img.shields.io/conda/dn/bioconda/snakemake.svg?label=Bioconda)](https://bioconda.github.io/recipes/snakemake/README.html)
[![Pypi](https://img.shields.io/pypi/pyversions/snakemake.svg)](https://pypi.org/project/snakemake)
[![docker container status](https://img.shields.io/github/actions/workflow/status/snakemake/snakemake/docker-publish.yml?color=blue&label=docker%20container)](https://hub.docker.com/r/snakemake/snakemake)
[![Stack Overflow](https://img.shields.io/badge/stack-overflow-orange.svg)](https://stackoverflow.com/questions/tagged/snakemake)
[![Twitter](https://img.shields.io/twitter/follow/johanneskoester.svg?style=social&label=Follow)](https://twitter.com/search?l=&q=%23snakemake%20from%3Ajohanneskoester)
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[![Github stars](https://img.shields.io/github/stars/snakemake/snakemake?style=social)](https://github.com/snakemake/snakemake/stargazers)
[![Contributor Covenant](https://img.shields.io/badge/Contributor%20Covenant-v2.0%20adopted-ff69b4.svg)](CODE_OF_CONDUCT.md) 

# Snakemake

The Snakemake workflow management system is a tool to create **reproducible and scalable** data analyses.
Snakemake is highly popular, with on average more than 7 new citations per week in 2021, and almost 400k downloads.
Workflows are described via a human readable, Python based language.
They can be seamlessly scaled to server, cluster, grid and cloud environments without the need to modify the workflow definition.
Finally, Snakemake workflows can entail a description of required software, which will be automatically deployed to any execution environment.

**Homepage: https://snakemake.github.io**

Copyright (c) 2012-2022 Johannes Köster <johannes.koester@uni-due.com> (see LICENSE)